STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0410MSHA pilin protein MshC; Similar to GB:X77217 PID:496759; identified by sequence similarity; putative. (162 aa)    
Predicted Functional Partners:
VC_0405
MSHA biogenesis protein MshE; Similar to PID:791156 PID:791159; identified by sequence similarity; putative.
 
 0.976
VC_0411
MSHA pilin protein MshD; Similar to GB:X77217 PID:673506 PID:673507; identified by sequence similarity; putative.
 
     0.946
VC_0412
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.944
VC_0413
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.905
VC_0409
MSHA pilin protein MshA; Similar to GP:673504; identified by sequence similarity; putative.
 
     0.884
VC_0414
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.875
VC_0404
MSHA biogenesis protein MshN; Similar to PID:791156 PID:791158; identified by sequence similarity; putative.
 
   
 0.869
VC_0400
MSHA biogenesis protein MshJ; Similar to PID:791156 PID:791154; identified by sequence similarity; putative.
 
   
 0.865
VC_0408
MSHA pilin protein MshB; Similar to GB:X77217 PID:496758; identified by sequence similarity; putative.
 
     0.858
VC_0402
MSHA biogenesis protein MshL; Similar to PID:791156; identified by sequence similarity; putative.
 
  
 0.816
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.