STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0494Conserved hypothetical protein; Identified by Glimmer2; putative. (214 aa)    
Predicted Functional Partners:
VC_0497
Transcriptional regulator; Similar to SP:P12552 PID:15163 PID:15171; identified by sequence similarity; putative.
 
  
 0.618
VC_0495
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
0.588
VC_0847
Integrase, phage family; Similar to GB:U02372 PID:498253 PID:1100883; identified by sequence similarity; putative; Belongs to the 'phage' integrase family.
  
     0.499
VC_0496
Hypothetical protein; Identified by Glimmer2; putative.
      
0.498
VC_0516
Phage integrase; Similar to SP:P32053 GB:U03737 PID:216669 PID:433349 PID:1033117; identified by sequence similarity; putative; Belongs to the 'phage' integrase family.
  
     0.481
VC_1576
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0267 family.
  
     0.472
VC_0498
Ribonuclease HI, putative; Similar to SP:P00647 PID:1208974 PID:147677 PID:147680 PID:42062; identified by sequence similarity; putative.
     
 0.463
VC_1758
Integrase, phage family; Similar to GB:U02372 PID:498253 PID:1100883; identified by sequence similarity; putative; Belongs to the 'phage' integrase family.
  
     0.439
VC_1663
Heat shock protein HslJ; Similar to SP:P52644 GB:U00096 PID:1742252 PID:1742258 PID:1787644; identified by sequence similarity; putative.
  
     0.420
VC_0600
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.400
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.