STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0608iron(III) ABC transporter, periplasmic iron-compound-binding protein; Similar to PID:1651916; identified by sequence similarity; putative. (352 aa)    
Predicted Functional Partners:
VC_0609
iron(III) ABC transporter, permease protein; Similar to PID:1001414 PID:1001407; identified by sequence similarity; putative.
 
 
 0.986
VC_0610
iron(III) ABC transporter, ATP-binding protein; Similar to PID:1653298; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
 
 
 0.961
VC_1264
Iron-regulated protein A, putative; Similar to SP:P12608 PID:154525; identified by sequence similarity; putative.
  
    0.875
VC_A0851
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
   0.808
VC_A0601
ABC transporter, permease protein; Similar to GB:L42023 PID:1003160 PID:1222041 PID:1204387 PID:1573082; identified by sequence similarity; putative.
  
 
 0.752
VC_A0686
iron(III) ABC transporter, permease protein; Similar to PID:1469285 PID:1477454; identified by sequence similarity; putative.
  
 
 0.752
VC_0097
Flagellar protein FliL, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.720
VC_0893
Chemotaxis protein PomB; Similar to PID:2130949; identified by sequence similarity; putative.
    
   0.720
VC_1763
Chemotaxis protein MotB-related protein; Similar to GB:AE000657; identified by sequence similarity; putative.
    
   0.720
VC_2127
Flagellar protein FliL, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.720
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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