Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC_0615Endoglucanase-related protein; Similar to PID:1663519; identified by sequence similarity; putative. (574 aa)    
Predicted Functional Partners:
VC_0613
beta-N-acetylhexosaminidase; Similar to PID:1698442; identified by sequence similarity; putative.
 
     0.937
gspK
Conserved hypothetical protein; ATP-dependent kinase, which is specific for glucosamine. Does not show kinase activity with any other sugar. Belongs to the eukaryotic-type N-acetylglucosamine kinase family.
 
     0.920
VC_0620
Peptide ABC transporter, periplasmic peptide-binding protein; Similar to GB:Pyro_h; identified by sequence similarity; putative.
 
     0.792
VC_0619
Peptide ABC transporter, permease protein; Similar to GB:Pyro_h; identified by sequence similarity; putative.
 
     0.785
VC_0616
Peptide ABC transporter, ATP-binding protein; Similar to GB:Pyro_h; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
       0.773
VC_0618
Peptide ABC transporter, permease protein; Similar to GB:Pyro_h; identified by sequence similarity; putative.
 
     0.772
VC_0769
Chitinase, putative; Similar to SP:P08252 PID:19861 PID:19863 PID:512387; identified by sequence similarity; putative.
  
     0.769
VC_A0700
Chitodextrinase; Similar to GP:3928775; identified by sequence similarity; putative.
  
     0.733
VC_1952
Chitinase; Similar to GP:3851166; identified by sequence similarity; putative.
  
     0.731
VC_A0027
Chitinase; Similar to SP:P32823 PID:216207; identified by sequence similarity; putative.
  
     0.731
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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