STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0654Conserved hypothetical protein; Identified by Glimmer2; putative. (175 aa)    
Predicted Functional Partners:
VC_0651
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.953
VC_0652
Protease, putative; Similar to SP:P45527 PID:606098 GB:U00096 PID:1789548; identified by sequence similarity; putative.
 
  
 0.910
VC_0655
Acetyltransferase, putative; Similar to SP:P45473 PID:606096 GB:U00096 PID:1789546; identified by sequence similarity; putative.
  
  
 0.870
VC_0717
Protease, putative; Similar to GB:U00096 SP:P76403 PID:1736789 PID:1736801 PID:1788397; identified by sequence similarity; putative.
 
  
 0.605
VC_A0675
Nitrate/nitrite sensor protein NarQ; Similar to GB:M94724 SP:P27896 GB:X65714 PID:146928 PID:581139; identified by sequence similarity; putative.
 
     0.587
VC_0656
DNA polymerase III, psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
       0.570
VC_0657
Ribosomal-protein-alanine acetyltransferase; Similar to GB:L42023 SP:P44305 PID:1004120 PID:1221913 PID:1204268; identified by sequence similarity; putative.
       0.570
VC_0653
c-di-GMP phosphodiesterase A-related protein; Similar to GP:3659618; identified by sequence similarity; putative.
       0.531
VC_2330
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.527
VC_2371
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.442
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.