STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0694Conserved hypothetical protein; Identified by Glimmer2; putative. (558 aa)    
Predicted Functional Partners:
VC_0693
Response regulator; Similar to SP:P33356 PID:405856 GB:U00096 PID:2367130; identified by sequence similarity; putative.
 
 0.993
VC_A0850
Response regulator; Similar to GB:M23230 SP:P26275 PID:151004 PID:1196739; identified by sequence similarity; putative.
 
 0.964
VC_A0851
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
0.747
VC_1082
Response regulator; Similar to PID:940149 GB:AE000512; identified by sequence similarity; putative.
    
 0.692
VC_0696
Chorismate mutase/prephenate dehydrogenase; Similar to SP:Q02287 GB:M74135 GB:X60420 PID:415010 PID:43345; identified by sequence similarity; putative.
       0.552
VC_0791
Sensor kinase citA; Similar to PID:924991 SP:P52687; identified by sequence similarity; putative.
  
   
 0.541
VC_0695
Phospho-2-dehydro-3-deoxyheptonate aldolase, tyr-sensitive; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).
       0.525
VC_1605
Sensor kinase citA, putative; Similar to PID:924991 SP:P52687; identified by sequence similarity; putative.
  
   
 0.523
VC_0790
Transcriptional regulator CitB; Similar to PID:912578; identified by sequence similarity; putative.
  
     0.490
VC_1825
Transcriptional regulator; Similar to GB:U00096 PID:1788725; identified by sequence similarity; putative.
  
  
  0.425
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.