Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_0694Conserved hypothetical protein; Identified by Glimmer2; putative. (558 aa)    
Predicted Functional Partners:
VC_0693
Response regulator; Similar to SP:P33356 PID:405856 GB:U00096 PID:2367130; identified by sequence similarity; putative.
 
 0.998
VC_A0850
Response regulator; Similar to GB:M23230 SP:P26275 PID:151004 PID:1196739; identified by sequence similarity; putative.
 
 
 0.909
VC_1605
Sensor kinase citA, putative; Similar to PID:924991 SP:P52687; identified by sequence similarity; putative.
  
   
 0.738
VC_0695
Phospho-2-dehydro-3-deoxyheptonate aldolase, tyr-sensitive; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).
       0.710
VC_0696
Chorismate mutase/prephenate dehydrogenase; Similar to SP:Q02287 GB:M74135 GB:X60420 PID:415010 PID:43345; identified by sequence similarity; putative.
       0.704
VC_0791
Sensor kinase citA; Similar to PID:924991 SP:P52687; identified by sequence similarity; putative.
  
   
 0.554
VC_2748
Nitrogen regulation protein; Similar to SP:P19906 PID:155172; identified by sequence similarity; putative.
      
 0.513
VC_2453
Sensor histidine kinase/response regulator; Similar to GB:D10888 SP:P26607 PID:216535 PID:882680 GB:U00096; identified by sequence similarity; putative.
      
 0.495
VC_0790
Transcriptional regulator CitB; Similar to PID:912578; identified by sequence similarity; putative.
  
     0.490
VC_1156
Sensor histidine kinase; Similar to GP:2655263; identified by sequence similarity; putative.
     
 0.473
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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