| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| VC_0698 | rplD | VC_0698 | VC_2595 | ABC transporter, ATP-binding protein; Similar to GB:L42023 SP:P45127 PID:1007176 PID:1221381 PID:1205493; identified by sequence similarity; putative. | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | 0.788 |
| VC_0698 | rplM | VC_0698 | VC_0570 | ABC transporter, ATP-binding protein; Similar to GB:L42023 SP:P45127 PID:1007176 PID:1221381 PID:1205493; identified by sequence similarity; putative. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.778 |
| VC_0698 | rplT | VC_0698 | VC_A0290 | ABC transporter, ATP-binding protein; Similar to GB:L42023 SP:P45127 PID:1007176 PID:1221381 PID:1205493; identified by sequence similarity; putative. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity). | 0.787 |
| VC_0698 | rplU | VC_0698 | VC_0435 | ABC transporter, ATP-binding protein; Similar to GB:L42023 SP:P45127 PID:1007176 PID:1221381 PID:1205493; identified by sequence similarity; putative. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.820 |
| VC_0698 | rpmD | VC_0698 | VC_2578 | ABC transporter, ATP-binding protein; Similar to GB:L42023 SP:P45127 PID:1007176 PID:1221381 PID:1205493; identified by sequence similarity; putative. | Ribosomal protein L30; Similar to GB:L42023 SP:P44366 PID:1005798 PID:1220890 PID:1205044; identified by sequence similarity; putative. | 0.780 |
| VC_0698 | rpmH | VC_0698 | VC_0007 | ABC transporter, ATP-binding protein; Similar to GB:L42023 SP:P45127 PID:1007176 PID:1221381 PID:1205493; identified by sequence similarity; putative. | Ribosomal protein L34; Similar to GB:L42023 SP:P44370 PID:1006197 PID:1221112 PID:1205248; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL34 family. | 0.765 |
| VC_0698 | rpsC | VC_0698 | VC_2590 | ABC transporter, ATP-binding protein; Similar to GB:L42023 SP:P45127 PID:1007176 PID:1221381 PID:1205493; identified by sequence similarity; putative. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.787 |
| VC_0698 | rpsE | VC_0698 | VC_2579 | ABC transporter, ATP-binding protein; Similar to GB:L42023 SP:P45127 PID:1007176 PID:1221381 PID:1205493; identified by sequence similarity; putative. | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.783 |
| VC_0698 | rpsG | VC_0698 | VC_0360 | ABC transporter, ATP-binding protein; Similar to GB:L42023 SP:P45127 PID:1007176 PID:1221381 PID:1205493; identified by sequence similarity; putative. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.769 |
| VC_0698 | rpsO | VC_0698 | VC_0646 | ABC transporter, ATP-binding protein; Similar to GB:L42023 SP:P45127 PID:1007176 PID:1221381 PID:1205493; identified by sequence similarity; putative. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.782 |
| rplD | VC_0698 | VC_2595 | VC_0698 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | ABC transporter, ATP-binding protein; Similar to GB:L42023 SP:P45127 PID:1007176 PID:1221381 PID:1205493; identified by sequence similarity; putative. | 0.788 |
| rplD | rplM | VC_2595 | VC_0570 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| rplD | rplT | VC_2595 | VC_A0290 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity). | 0.997 |
| rplD | rplU | VC_2595 | VC_0435 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.995 |
| rplD | rpmD | VC_2595 | VC_2578 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | Ribosomal protein L30; Similar to GB:L42023 SP:P44366 PID:1005798 PID:1220890 PID:1205044; identified by sequence similarity; putative. | 0.999 |
| rplD | rpmH | VC_2595 | VC_0007 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | Ribosomal protein L34; Similar to GB:L42023 SP:P44370 PID:1006197 PID:1221112 PID:1205248; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL34 family. | 0.969 |
| rplD | rpsC | VC_2595 | VC_2590 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
| rplD | rpsE | VC_2595 | VC_2579 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.999 |
| rplD | rpsG | VC_2595 | VC_0360 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
| rplD | rpsO | VC_2595 | VC_0646 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.994 |
