Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC_0717Protease, putative; Similar to GB:U00096 SP:P76403 PID:1736789 PID:1736801 PID:1788397; identified by sequence similarity; putative. (466 aa)    
Predicted Functional Partners:
VC_0716
Ferredoxin; Similar to GB:L42023 PID:1003938 PID:1222462 PID:1204778 SP:P44746; identified by sequence similarity; putative.
  
 
 0.946
VC_0651
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
0.764
rdgC
Conserved hypothetical protein; May be involved in recombination; Belongs to the RdgC family.
 
     0.762
VC_0654
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.668
VC_1632
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
   0.661
VC_0720
Histidine protein kinase PhoR; Similar to GP:3282775; identified by sequence similarity; putative.
       0.621
VC_0721
Phosphate ABC transporter, periplasmic phosphate-binding protein, putative; Similar to GB:AE000782; identified by sequence similarity; putative.
       0.621
pcm
protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
  
   0.615
VC_0116
Oxygen-independent coproporphyrinogen III oxidase; Similar to GB:L19201 SP:P32131 GB:X82073 PID:1220106 PID:304972; identified by sequence similarity; putative; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
    0.569
VC_1441
Cytochrome c oxidase, subunit CcoO; Similar to PID:1377866; identified by sequence similarity; putative.
   
   0.544
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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