STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0789Hypothetical protein; Identified by Glimmer2; putative. (90 aa)    
Predicted Functional Partners:
VC_0788
DOPA-dioxygenase-related protein; Similar to PID:2072624; identified by sequence similarity; putative.
       0.464
VC_0865
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.443
VC_1063
acyl-CoA thioesterase II; Similar to GB:M63308 SP:P23911 PID:147932 GB:U00096 PID:1773136; identified by sequence similarity; putative.
      
 0.425
VC_1865
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.425
VC_A0590
Peptide ABC transporter, permease protein, putative; Similar to SP:P33914 GB:U00008 PID:405905 GB:U00096 PID:1736843; identified by sequence similarity; putative.
      
 0.425
VC_A0591
Peptide ABC transporter, periplasmic peptide-binding protein, putative; Similar to SP:P33913 GB:U00008 PID:453986 GB:U00096 PID:1788503; identified by sequence similarity; putative.
      
 0.425
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.