Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_0791Sensor kinase citA; Similar to PID:924991 SP:P52687; identified by sequence similarity; putative. (565 aa)    
Predicted Functional Partners:
VC_0790
Transcriptional regulator CitB; Similar to PID:912578; identified by sequence similarity; putative.
 
 0.998
VC_1604
Response regulator; Similar to GB:AL009126; identified by sequence similarity; putative.
 
 
 0.934
VC_1334
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.723
VC_1155
Response regulator; Similar to GP:551953; identified by sequence similarity; putative.
  
 
 0.684
VC_1332
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.654
oadB
Oxaloacetate decarboxylase, beta subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation.
       0.578
VC_0694
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.554
VC_0795
Citrate/sodium symporter; Similar to GB:M83146 SP:P31602 GB:X12599 GB:Y00525 PID:149181; identified by sequence similarity; putative.
 
  
 0.443
VC_0693
Response regulator; Similar to SP:P33356 PID:405856 GB:U00096 PID:2367130; identified by sequence similarity; putative.
 
   
 0.435
VC_2719
ComF-related protein; Similar to SP:P46846 PID:606348 GB:U00096 PID:1789818; identified by sequence similarity; putative.
   
    0.417
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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