STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
citGcitG protein; Similar to GB:X79817 SP:P45414 PID:565620; identified by sequence similarity; putative. (313 aa)    
Predicted Functional Partners:
citX
citX protein; Transfers 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A on a serine residue to the apo-acyl carrier protein (gamma chain) of the citrate lyase to yield holo-acyl carrier protein; Belongs to the CitX family.
 
 0.999
citD
Citrate lyase, gamma subunit; Covalent carrier of the coenzyme of citrate lyase.
 
  
 0.997
VC_0798
Citrate lyase, beta subunit; Similar to GB:L42023 SP:P44460 PID:1004146 PID:1221927 PID:1204281; identified by sequence similarity; putative; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.994
VC_0799
Citrate lyase, alpha subunit; Similar to GB:X79817 SP:P45413 PID:565619; identified by sequence similarity; putative.
 
  
 0.990
VC_0796
Citrate (pro-3S)-lyase ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
  
 0.988
VC_0795
Citrate/sodium symporter; Similar to GB:M83146 SP:P31602 GB:X12599 GB:Y00525 PID:149181; identified by sequence similarity; putative.
 
   
 0.738
oadB
Oxaloacetate decarboxylase, beta subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation.
     
 0.639
accD
acetyl-CoA carboxylase, carboxyl transferase beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
  
 0.599
VC_2022
Malonyl Coa-acyl carrier protein transacylase; Similar to GB:M87040 SP:P25715 GB:Z11565 PID:145887 PID:41364; identified by sequence similarity; putative.
  
    0.515
VC_0619
Peptide ABC transporter, permease protein; Similar to GB:Pyro_h; identified by sequence similarity; putative.
      
 0.465
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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