Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VC_0440 | VC_0802 | VC_0440 | VC_0802 | Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis. | Hypothetical protein; Identified by Glimmer2; putative. | 0.658 |
VC_0440 | purU | VC_0440 | VC_1992 | Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis. | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | 0.672 |
VC_0481 | VC_0802 | VC_0481 | VC_0802 | LysE/YggA family protein; Similar to SP:P11667 PID:41425 PID:882452 GB:U00096 PID:1789290; identified by sequence similarity; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.659 |
VC_0802 | VC_0440 | VC_0802 | VC_0440 | Hypothetical protein; Identified by Glimmer2; putative. | Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis. | 0.658 |
VC_0802 | VC_0481 | VC_0802 | VC_0481 | Hypothetical protein; Identified by Glimmer2; putative. | LysE/YggA family protein; Similar to SP:P11667 PID:41425 PID:882452 GB:U00096 PID:1789290; identified by sequence similarity; putative. | 0.659 |
VC_0802 | VC_0803 | VC_0802 | VC_0803 | Hypothetical protein; Identified by Glimmer2; putative. | RNA methyltransferase, TrmH family; Similar to GB:AL009126; identified by sequence similarity; putative. | 0.563 |
VC_0802 | purU | VC_0802 | VC_1992 | Hypothetical protein; Identified by Glimmer2; putative. | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | 0.437 |
VC_0803 | VC_0802 | VC_0803 | VC_0802 | RNA methyltransferase, TrmH family; Similar to GB:AL009126; identified by sequence similarity; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.563 |
purU | VC_0440 | VC_1992 | VC_0440 | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis. | 0.672 |
purU | VC_0802 | VC_1992 | VC_0802 | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | Hypothetical protein; Identified by Glimmer2; putative. | 0.437 |