STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0815Hypothetical protein; Identified by Glimmer2; putative. (456 aa)    
Predicted Functional Partners:
VC_0814
Transcriptional regulator, putative; Similar to GB:X76192 SP:P43640 PID:431929; identified by sequence similarity; putative.
 
 
 
 0.993
VC_A0958
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.842
VC_0176
Transcriptional regulator, putative; Similar to GB:M36477 SP:P23789 GB:M36478 PID:143833 PID:1225936; identified by sequence similarity; putative.
  
 
 0.778
rstR1
Transcriptional repressor RstR; Transcriptional repressor of the integrated CTXPhi phage gene rstA2.
  
 
 0.778
VC_1464
Transcriptional repressor RstR; Similar to GP:2564351; identified by sequence similarity; putative.
  
 
 0.778
VC_1968
Transcriptional regulator, HTH_3 family; Similar to GB:U00096 SP:P77626 PID:1742340 PID:1742346 PID:1787704; identified by sequence similarity; putative.
  
 
 0.778
VC_A0279
Transcriptional regulator, HTH_3 family; Similar to GB:AE000666; identified by sequence similarity; putative.
  
 
 0.778
VC_A0619
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.778
VC_1246
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.539
VC_1224
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.523
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.