STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0841Accessory colonization factor AcfC; Similar to GB:U15606 PID:1100874 PID:1100875 PID:558481; identified by sequence similarity; putative. (256 aa)    
Predicted Functional Partners:
tcpN
TCP pilus virulence regulatory protein; Probable regulatory protein for the tcp operon.
       0.773
tcpJ
Leader peptidase TcpJ; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. Processes the TcpA pilin precursor during membrane translocation.
       0.773
VC_0840
Accessory colonization factor AcfB; Similar to GB:L25660 GB:U15606 PID:1100874 PID:431739 PID:558482; identified by sequence similarity; putative.
       0.773
VC_0842
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.732
VC_0843
tagE protein; Similar to GB:U07173 PID:460955 PID:1100877; identified by sequence similarity; putative.
       0.726
VC_0893
Chemotaxis protein PomB; Similar to PID:2130949; identified by sequence similarity; putative.
  
 
   0.723
VC_1763
Chemotaxis protein MotB-related protein; Similar to GB:AE000657; identified by sequence similarity; putative.
  
 
   0.712
VC_0097
Flagellar protein FliL, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.674
VC_2127
Flagellar protein FliL, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.674
tcpF
Toxin co-regulated pilus biosynthesis protein F; Involved in TCP pilus biogenesis. May be a channel protein.
       0.440
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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