Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
acfDConserved hypothetical protein; Identified by Glimmer2; putative. (1520 aa)    
Predicted Functional Partners:
alaE
Conserved hypothetical protein; Exports L-alanine; Belongs to the AlaE exporter family.
  
     0.694
VC_1703
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.650
malT
malT regulatory protein; Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto- oligosaccharides. Specifically binds to the promoter region of its target genes, recognizing a short DNA motif called the MalT box.
  
     0.552
VC_1073
Chitinase, putative; Similar to PID:1698444; identified by sequence similarity; putative.
   
 
 0.538
VC_A0027
Chitinase; Similar to SP:P32823 PID:216207; identified by sequence similarity; putative.
   
 
 0.538
VC_A0700
Chitodextrinase; Similar to GP:3928775; identified by sequence similarity; putative.
   
 
 0.538
dinB
DNA-damage-inducible protein P; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
    
   0.526
VC_1548
Hypothetical protein; Identified by Glimmer2; putative.
    
 
 0.525
VC_0844
Accessory colonization factor AcfA; Similar to GB:L29060 PID:456440 PID:1100878; identified by sequence similarity; putative.
       0.511
VC_A0543
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.507
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.