Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC_0857Fimbrial assembly protein PilE, putative; Similar to GB:U02552 PID:1246304 PID:435924; identified by sequence similarity; putative. (147 aa)    
Predicted Functional Partners:
VC_0858
Type IV pilin, putative; Similar to PID:1161221; identified by sequence similarity; putative.
 
  
 0.982
VC_0861
Type IV pilin, putative; Similar to PID:1161222 PID:1246299 PID:643582; identified by sequence similarity; putative.
 
  
 0.967
VC_0860
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.866
VC_2633
Fimbrial assembly protein PilN, putative; Similar to GB:U12892 PID:530857; identified by sequence similarity; putative.
 
  
 0.860
VC_2631
Fimbrial assembly protein PilP, putative; Similar to PID:1173874 PID:1914828; identified by sequence similarity; putative.
  
  
 0.853
VC_2632
Fimbrial assembly protein PilO, putative; Similar to GB:U12892 PID:530858; identified by sequence similarity; putative.
 
  
 0.838
VC_2634
Fimbrial assembly protein PilM, putative; Similar to GB:L28837 PID:895925; identified by sequence similarity; putative.
 
   
 0.829
VC_1612
Fimbrial biogenesis and twitching motility protein, putative; Similar to PID:1162960; identified by sequence similarity; putative.
  
   
 0.783
VC_2630
Fimbrial assembly protein; Similar to GB:L13865 SP:P34750 PID:459551; identified by sequence similarity; putative.
 
   
 0.774
VC_0047
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.734
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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