STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0858Type IV pilin, putative; Similar to PID:1161221; identified by sequence similarity; putative. (184 aa)    
Predicted Functional Partners:
VC_0861
Type IV pilin, putative; Similar to PID:1161222 PID:1246299 PID:643582; identified by sequence similarity; putative.
 
  
 0.985
VC_0857
Fimbrial assembly protein PilE, putative; Similar to GB:U02552 PID:1246304 PID:435924; identified by sequence similarity; putative.
 
  
 0.962
VC_0859
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.898
VC_0860
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.887
epsH
General secretion pathway protein H; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (By similarity). Required for secretion of cholera toxin through the outer membrane.
 
  
 0.739
VC_2632
Fimbrial assembly protein PilO, putative; Similar to GB:U12892 PID:530858; identified by sequence similarity; putative.
 
  
 0.679
VC_0863
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.672
VC_0862
Hypothetical protein; Identified by Glimmer2; putative.
       0.651
VC_2633
Fimbrial assembly protein PilN, putative; Similar to GB:U12892 PID:530857; identified by sequence similarity; putative.
 
  
 0.608
VC_2631
Fimbrial assembly protein PilP, putative; Similar to PID:1173874 PID:1914828; identified by sequence similarity; putative.
  
  
 0.600
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.