STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0860Hypothetical protein; Identified by Glimmer2; putative. (413 aa)    
Predicted Functional Partners:
VC_0861
Type IV pilin, putative; Similar to PID:1161222 PID:1246299 PID:643582; identified by sequence similarity; putative.
  
  
 0.947
VC_0858
Type IV pilin, putative; Similar to PID:1161221; identified by sequence similarity; putative.
  
  
 0.918
VC_0857
Fimbrial assembly protein PilE, putative; Similar to GB:U02552 PID:1246304 PID:435924; identified by sequence similarity; putative.
  
  
 0.866
VC_0859
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.808
VC_0863
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.699
VC_0862
Hypothetical protein; Identified by Glimmer2; putative.
       0.651
tadA
yfhC protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.585
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.