STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0861Type IV pilin, putative; Similar to PID:1161222 PID:1246299 PID:643582; identified by sequence similarity; putative. (137 aa)    
Predicted Functional Partners:
VC_0858
Type IV pilin, putative; Similar to PID:1161221; identified by sequence similarity; putative.
 
  
 0.990
VC_0857
Fimbrial assembly protein PilE, putative; Similar to GB:U02552 PID:1246304 PID:435924; identified by sequence similarity; putative.
 
  
 0.967
VC_0860
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.947
VC_0859
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.822
VC_1899
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.766
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.762
VC_1280
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.760
VC_A1114
ParB family protein; Similar to SP:P08867 GB:M12987 GB:X04619 PID:148592 PID:42432; identified by sequence similarity; putative; Belongs to the ParB family.
  
     0.753
VC_1342
MutT/nudix family protein; Similar to SP:P32091 PID:298045; identified by sequence similarity; putative.
  
     0.752
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.750
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.