STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0871Hypothetical protein; Identified by Glimmer2; putative. (63 aa)    
Predicted Functional Partners:
VC_0872
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0253 family.
 
     0.863
VC_2473
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.639
VC_1731
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.625
VC_0901
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.581
VC_0873
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.576
VC_1637
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.519
VC_2276
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0255 family.
  
     0.518
VC_2344
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.504
VC_0769
Chitinase, putative; Similar to SP:P08252 PID:19861 PID:19863 PID:512387; identified by sequence similarity; putative.
 
     0.480
VC_0765
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.470
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.