STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0872Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0253 family. (67 aa)    
Predicted Functional Partners:
VC_0871
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.863
VC_0153
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.765
VC_1871
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0304 family.
  
     0.761
VC_A0543
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.754
VC_2276
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0255 family.
  
     0.752
VC_0064
thiS protein; Similar to PID:1469147; identified by sequence similarity; putative.
  
   
 0.728
VC_1576
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0267 family.
  
     0.694
VC_0144
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.693
VC_A0544
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.684
VC_0765
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.682
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.