STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0884Acetyltransferase-related protein; Similar to SP:P05332 GB:X07542 PID:39573; identified by sequence similarity; putative. (207 aa)    
Predicted Functional Partners:
vcc
Collagenase; Possesses gelatinolytic activity; Belongs to the peptidase M9A family.
  
     0.662
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.637
VC_1280
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.615
VC_1210
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.596
VC_A1114
ParB family protein; Similar to SP:P08867 GB:M12987 GB:X04619 PID:148592 PID:42432; identified by sequence similarity; putative; Belongs to the ParB family.
  
     0.591
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.579
VC_0883
Hypothetical protein; Identified by Glimmer2; putative.
       0.563
VC_0039
SpoOM-related protein; Similar to GP:3522984; identified by sequence similarity; putative.
  
     0.535
VC_2739
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.524
VC_1342
MutT/nudix family protein; Similar to SP:P32091 PID:298045; identified by sequence similarity; putative.
  
     0.521
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.