STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0886Hypothetical protein; Identified by Glimmer2; putative. (345 aa)    
Predicted Functional Partners:
VC_0885
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.851
VC_2098
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.690
VC_1271
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.662
VC_2208
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.660
VC_1310
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.653
VC_0887
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.602
truC
Pseudouridine synthase Rlu family protein; Responsible for synthesis of pseudouridine from uracil-65 in transfer RNAs; Belongs to the pseudouridine synthase RluA family.
       0.602
VC_2557
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.555
VC_1997
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.554
VC_2207
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.550
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.