Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC_0901Hypothetical protein; Identified by Glimmer2; putative. (753 aa)    
Predicted Functional Partners:
queF
Conserved hypothetical protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
       0.837
VC_0904
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.817
VC_1157
Response regulator; Similar to PID:643672; identified by sequence similarity; putative.
  
 
 
 0.782
ompU
Outer membrane protein OmpU; Forms pores that allow passive diffusion of small molecules across the outer membrane.
  
 
   0.779
VC_2038
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.775
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.774
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.772
VC_1824
PTS system, nitrogen regulatory IIA component, putative; Similar to GB:U00096 PID:1788726 PID:1799794; identified by sequence similarity; putative.
  
     0.770
VC_1342
MutT/nudix family protein; Similar to SP:P32091 PID:298045; identified by sequence similarity; putative.
  
     0.769
VC_0132
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.768
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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