STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0924capK protein, putative; Similar to GB:U10927 SP:P39860 PID:506707; identified by sequence similarity; putative. (446 aa)    
Predicted Functional Partners:
VC_0919
Serine acetyltransferase-related protein; Similar to GB: GB: GB: PID:1107505 PID:1184048; identified by sequence similarity; putative.
    
 0.943
VC_0923
Serine acetyltransferase-related protein; Similar to GB:AE000511 SP:P71405 PID:1518452 PID:2314370; identified by sequence similarity; putative.
    
  0.870
VC_0925
Polysaccharide biosynthesis protein, putative; Similar to GB:AE000666; identified by sequence similarity; putative.
 
     0.840
VC_0926
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.837
VC_0918
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; Similar to PID:600868 SP:Q45410; identified by sequence similarity; putative; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
   
 0.836
VC_2033
Alcohol dehydrogenase/acetaldehyde dehydrogenase; Similar to GB:M33504 SP:P17547 GB:X59263 GB:X67326 PID:145206; identified by sequence similarity; putative; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
   
 0.830
VC_0927
UDP-N-acetyl-D-mannosamine transferase; Similar to GB:U09239 PID:485280; identified by sequence similarity; putative; Belongs to the glycosyltransferase 26 family.
 
     0.826
VC_0937
Exopolysaccharide biosynthesis protein, putative; Similar to GP:3493609; identified by sequence similarity; putative.
 
  
  0.826
aldA
Aldehyde dehydrogenase; May be involved in V.cholerae virulence, as its expression is under the control of ToxR, a transcriptional activator of several genes associated with virulence.
   
 0.820
VC_1745
Succinate-semialdehyde dehydrogenase; Similar to GB:M88334 SP:P25526 PID:147901 GB:U00096 PID:1789015; identified by sequence similarity; putative; Belongs to the aldehyde dehydrogenase family.
   
 0.820
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.