STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0928Hypothetical protein; Identified by Glimmer2; putative. (271 aa)    
Predicted Functional Partners:
VC_0926
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.608
VC_0927
UDP-N-acetyl-D-mannosamine transferase; Similar to GB:U09239 PID:485280; identified by sequence similarity; putative; Belongs to the glycosyltransferase 26 family.
       0.469
VC_0924
capK protein, putative; Similar to GB:U10927 SP:P39860 PID:506707; identified by sequence similarity; putative.
       0.467
VC_0925
Polysaccharide biosynthesis protein, putative; Similar to GB:AE000666; identified by sequence similarity; putative.
       0.460
VC_0920
Exopolysaccharide biosynthesis protein EpsF, putative; Similar to GP:1276879; identified by sequence similarity; putative.
       0.458
VC_0921
Polysaccharide export protein, putative; Similar to PID:747670 SP:Q48457; identified by sequence similarity; putative.
       0.458
VC_0922
Hypothetical protein; Identified by Glimmer2; putative.
       0.458
VC_0923
Serine acetyltransferase-related protein; Similar to GB:AE000511 SP:P71405 PID:1518452 PID:2314370; identified by sequence similarity; putative.
       0.446
VC_0918
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; Similar to PID:600868 SP:Q45410; identified by sequence similarity; putative; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.438
VC_0919
Serine acetyltransferase-related protein; Similar to GB: GB: GB: PID:1107505 PID:1184048; identified by sequence similarity; putative.
       0.438
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.