STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0931Conserved hypothetical protein; Identified by Glimmer2; putative. (438 aa)    
Predicted Functional Partners:
VC_0937
Exopolysaccharide biosynthesis protein, putative; Similar to GP:3493609; identified by sequence similarity; putative.
 
  
 0.851
VC_0936
Polysaccharide export-related protein; Similar to GB:L05588 SP:Q02728 PID:152191; identified by sequence similarity; putative.
 
  
 0.824
VC_0935
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.773
VC_0934
Capsular polysaccharide biosynthesis glycosyltransferase, putative; Similar to GB:U00096 SP:P71241 PID:1407618 PID:1736749 PID:1736753; identified by sequence similarity; putative.
 
  
 0.734
rfbA
Mannose-1-phosphate guanylyltransferase; Similar to GB:X59554 SP:Q07024 PID:48383; identified by sequence similarity; putative.
  
  
 0.585
VC_0921
Polysaccharide export protein, putative; Similar to PID:747670 SP:Q48457; identified by sequence similarity; putative.
  
  
 0.521
VC_0932
Hypothetical protein; Identified by Glimmer2; putative.
       0.503
VC_0933
Hypothetical protein; Identified by Glimmer2; putative.
       0.459
VC_0263
Galactosyl-transferase, putative; Similar to PID:1929427; identified by sequence similarity; putative.
  
  
 0.425
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.