STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0975Conserved hypothetical protein; Identified by Glimmer2; putative. (189 aa)    
Predicted Functional Partners:
VC_0976
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.965
cobS
Cobalamin (5`-phosphate) synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
   
    0.776
VC_A1051
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
    0.495
ribN
Conserved hypothetical protein; Transports riboflavin into the cell. Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (DME) (TC 2.A.7.3) family.
  
     0.488
VC_1639
Sensor histidine kinase; Similar to PID:929823; identified by sequence similarity; putative.
  
    0.477
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
   
    0.473
hflC
hflC protein; HflC and HflK could regulate a protease.
 
  
 0.472
VC_2255
Phosphatidate cytidylyltransferase; Similar to GB:L42023 SP:P44937 PID:1006039 PID:1221024 PID:1205166; identified by sequence similarity; putative; Belongs to the CDS family.
   
    0.468
hflK
hflK protein; HflC and HflK could encode or regulate a protease.
 
  
 0.459
VC_1676
Phage shock protein C; Similar to SP:P23855 GB:X57560 PID:42541 GB:U00096 PID:1742136; identified by sequence similarity; putative.
  
    0.417
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.