Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_0979Oxidoreductase, short-chain dehydrogenase/reductase family; Similar to GB:U00096 SP:P77388 PID:1773175 PID:1786701; identified by sequence similarity; putative. (275 aa)    
Predicted Functional Partners:
VC_0977
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.654
VC_0249
rfbL protein; Similar to GB:X59554 PID:48391; identified by sequence similarity; putative.
   
 
 0.647
VC_0976
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.647
VC_1971
O-succinylbenzoic acid--CoA ligase; Similar to GB:L35031 SP:P37353 PID:520813 GB:U00096 PID:1788595; identified by sequence similarity; putative.
   
 
 0.647
VC_1985
long-chain-fatty-acid--CoA ligase; Similar to SP:P29212 GB:L02649 GB:X70994 PID:581070 GB:U00096; identified by sequence similarity; putative.
   
 
 0.647
VC_1591
Oxidoreductase, short-chain dehydrogenase/reductase family; Similar to SP:Q11020 PID:1419053 GB:AL123456; identified by sequence similarity; putative.
   
 
 0.639
VC_A0301
Oxidoreductase, short-chain dehydrogenase/reductase family; Similar to PID:887852 GB:U00096 PID:1773222 PID:2160242 PID:2367175; identified by sequence similarity; putative.
   
 
 0.626
VC_0231
Hypothetical protein; Identified by Glimmer2; putative.
    
   0.592
VC_2522
Conserved hypothetical protein; Identified by Glimmer2; putative.
    
   0.590
VC_0978
Hypothetical protein; Identified by Glimmer2; putative.
       0.566
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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