Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| VC_0982 | htpG | VC_0982 | VC_0985 | Selenoprotein W-related protein; Similar to SP:O19097; identified by sequence similarity; putative. | Heat shock protein HtpG; Molecular chaperone. Has ATPase activity; Belongs to the heat shock protein 90 family. | 0.476 |
| VC_0982 | toxR | VC_0982 | VC_0984 | Selenoprotein W-related protein; Similar to SP:O19097; identified by sequence similarity; putative. | Cholera toxin transcriptional activator; This transcription activator controls cholera toxin, pilus colonization factor and outer membrane protein expression in V.cholerae. It binds to the 5'-TTTTGAT-3' tandemly repeated DNA sequence in the cholera toxin promoter region. ToxS interacts with the C-terminal periplasmic domain of ToxR, stimulating its activity. It activates transcription at the promoters for tcpI and tcpA and this is presumably via ToxT. | 0.686 |
| VC_0982 | toxS | VC_0982 | VC_0983 | Selenoprotein W-related protein; Similar to SP:O19097; identified by sequence similarity; putative. | Regulatory protein ToxS; Interacts with ToxR and stimulates its activity. | 0.687 |
| htpG | VC_0982 | VC_0985 | VC_0982 | Heat shock protein HtpG; Molecular chaperone. Has ATPase activity; Belongs to the heat shock protein 90 family. | Selenoprotein W-related protein; Similar to SP:O19097; identified by sequence similarity; putative. | 0.476 |
| htpG | toxR | VC_0985 | VC_0984 | Heat shock protein HtpG; Molecular chaperone. Has ATPase activity; Belongs to the heat shock protein 90 family. | Cholera toxin transcriptional activator; This transcription activator controls cholera toxin, pilus colonization factor and outer membrane protein expression in V.cholerae. It binds to the 5'-TTTTGAT-3' tandemly repeated DNA sequence in the cholera toxin promoter region. ToxS interacts with the C-terminal periplasmic domain of ToxR, stimulating its activity. It activates transcription at the promoters for tcpI and tcpA and this is presumably via ToxT. | 0.548 |
| htpG | toxS | VC_0985 | VC_0983 | Heat shock protein HtpG; Molecular chaperone. Has ATPase activity; Belongs to the heat shock protein 90 family. | Regulatory protein ToxS; Interacts with ToxR and stimulates its activity. | 0.635 |
| toxR | VC_0982 | VC_0984 | VC_0982 | Cholera toxin transcriptional activator; This transcription activator controls cholera toxin, pilus colonization factor and outer membrane protein expression in V.cholerae. It binds to the 5'-TTTTGAT-3' tandemly repeated DNA sequence in the cholera toxin promoter region. ToxS interacts with the C-terminal periplasmic domain of ToxR, stimulating its activity. It activates transcription at the promoters for tcpI and tcpA and this is presumably via ToxT. | Selenoprotein W-related protein; Similar to SP:O19097; identified by sequence similarity; putative. | 0.686 |
| toxR | htpG | VC_0984 | VC_0985 | Cholera toxin transcriptional activator; This transcription activator controls cholera toxin, pilus colonization factor and outer membrane protein expression in V.cholerae. It binds to the 5'-TTTTGAT-3' tandemly repeated DNA sequence in the cholera toxin promoter region. ToxS interacts with the C-terminal periplasmic domain of ToxR, stimulating its activity. It activates transcription at the promoters for tcpI and tcpA and this is presumably via ToxT. | Heat shock protein HtpG; Molecular chaperone. Has ATPase activity; Belongs to the heat shock protein 90 family. | 0.548 |
| toxR | toxS | VC_0984 | VC_0983 | Cholera toxin transcriptional activator; This transcription activator controls cholera toxin, pilus colonization factor and outer membrane protein expression in V.cholerae. It binds to the 5'-TTTTGAT-3' tandemly repeated DNA sequence in the cholera toxin promoter region. ToxS interacts with the C-terminal periplasmic domain of ToxR, stimulating its activity. It activates transcription at the promoters for tcpI and tcpA and this is presumably via ToxT. | Regulatory protein ToxS; Interacts with ToxR and stimulates its activity. | 0.994 |
| toxS | VC_0982 | VC_0983 | VC_0982 | Regulatory protein ToxS; Interacts with ToxR and stimulates its activity. | Selenoprotein W-related protein; Similar to SP:O19097; identified by sequence similarity; putative. | 0.687 |
| toxS | htpG | VC_0983 | VC_0985 | Regulatory protein ToxS; Interacts with ToxR and stimulates its activity. | Heat shock protein HtpG; Molecular chaperone. Has ATPase activity; Belongs to the heat shock protein 90 family. | 0.635 |
| toxS | toxR | VC_0983 | VC_0984 | Regulatory protein ToxS; Interacts with ToxR and stimulates its activity. | Cholera toxin transcriptional activator; This transcription activator controls cholera toxin, pilus colonization factor and outer membrane protein expression in V.cholerae. It binds to the 5'-TTTTGAT-3' tandemly repeated DNA sequence in the cholera toxin promoter region. ToxS interacts with the C-terminal periplasmic domain of ToxR, stimulating its activity. It activates transcription at the promoters for tcpI and tcpA and this is presumably via ToxT. | 0.994 |