Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
VC_1008Sodium-type flagellar protein MotY; Similar to GB:U06949 SP:P46233 PID:497129; identified by sequence similarity; putative. (294 aa)    
Predicted Functional Partners:
VC_2601
Sodium-type flagellar protein MotX; Similar to GB:U09005 SP:P40608 PID:507737; identified by sequence similarity; putative.
  
 
 0.974
VC_2206
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 
 0.948
flgH
Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
  
 
 0.922
VC_2208
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 
 0.908
VC_2133
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
 
 0.870
VC_2196
Flagellar basal-body rod protein FlgF; Similar to GB:U00096 SP:P75938 PID:1787317; identified by sequence similarity; putative; Belongs to the flagella basal body rod proteins family.
  
 
 
 0.859
tolB
tolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.837
VC_0893
Chemotaxis protein PomB; Similar to PID:2130949; identified by sequence similarity; putative.
  
 
 0.831
flgI
Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
    
 
 0.828
VC_2200
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
  
 
 
 0.827
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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