STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_1030Hypothetical protein; Identified by Glimmer2; putative. (30 aa)    
Predicted Functional Partners:
VC_A0698
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.618
VC_1029
GGDEF family protein; Similar to PID:1001216 PID:1673324; identified by sequence similarity; putative.
       0.608
VC_1031
Inosine monophosphate dehydrogenase-related protein; Similar to GB:L77117 SP:Q58069 PID:1592300; identified by sequence similarity; putative.
       0.558
VC_0025
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.540
prmB
Adenine-specific methylase, putative; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
      
 0.435
VC_A0158
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.435
VC_A0627
rRNA methylase, putative; Similar to GP:3328978; identified by sequence similarity; putative.
      
 0.405
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.