Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_1071Transporter, putative; Similar to GP:3128308; identified by sequence similarity; putative. (411 aa)    
Predicted Functional Partners:
VC_1069
Glyceraldehyde 3-phosphate dehydrogenase; Similar to GB:L07499 SP:P34918 PID:410113; identified by sequence similarity; putative; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
 
   
 0.964
VC_1070
Phosphatase, putative; Similar to PID:2224838; identified by sequence similarity; putative.
 
   
 0.935
VC_1068
Transcriptional regulator, ArsR family; Similar to SP:P15905 GB:X16045 PID:42717; identified by sequence similarity; putative.
     
 0.874
VC_1072
Hypothetical protein; Identified by Glimmer2; putative.
       0.504
VC_0136
Conserved hypothetical protein; Involved in positive regulation of motility and negative regulation of biofilm formation.
       0.459
VC_1041
Phosphotyrosine protein phosphatase; Similar to PID:1001414 PID:1001408; identified by sequence similarity; putative; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
      
 0.417
VC_0135
Lysophospholipase L2; Similar to PID:1449198; identified by sequence similarity; putative.
     
 0.413
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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