STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1074Hypothetical protein; Identified by Glimmer2; putative. (276 aa)    
Predicted Functional Partners:
VC_0589
ABC transporter, ATP-binding protein; Similar to GB:D26562 SP:P36879 PID:473794 GB:U00096 PID:1786319; identified by sequence similarity; putative.
  
 
 0.690
VC_0590
Permease, putative; Similar to GB:D26562 SP:P36880 PID:473795 GB:U00096 PID:1786320; identified by sequence similarity; putative.
  
  
 0.580
VC_1608
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.580
VC_1609
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.580
VC_0715
NADPH-flavin oxidoreductase; Similar to GB:U08996 PID:478986; identified by sequence similarity; putative; Belongs to the flavin oxidoreductase frp family.
  
  
 0.515
VC_1048
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.515
VC_A0637
Oxygen-insensitive NAD(P)H nitroreductase; Similar to GB:M63808 SP:Q01234 PID:148362; identified by sequence similarity; putative.
  
  
 0.515
VC_1075
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.509
mnmC
Conserved hypothetical protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the N-terminal section; belongs to the methyltransferase superfamily. tRNA (mnm(5)s(2)U34)-methyltransferase family.
  
    0.440
kefB
Glutathione-regulated potassium-efflux system protein KefB; Pore-forming subunit of a potassium efflux system that confers protection against electrophiles. Catalyzes K(+)/H(+) antiport.
   
  
 0.436
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.