Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_1096Conserved hypothetical protein; Identified by Glimmer2; putative. (315 aa)    
Predicted Functional Partners:
VC_1094
Oligopeptide ABC transporter, ATP-binding protein; Similar to GB:U00096 SP:P76027 PID:1742035 PID:1787499 PID:1805527; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
       0.717
VC_1095
Oligopeptide ABC transporter, ATP-binding protein; Similar to GB:U00096 SP:P77737 PID:1742036 PID:1787500 PID:1805528; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
       0.717
VC_1092
Oligopeptide ABC transporter, permease protein; Similar to GB:U00096 PID:1742033 PID:1787497 PID:1805525; identified by sequence similarity; putative.
       0.658
VC_2160
Bacterioferritin comigratory protein; Similar to GB:M63654 SP:P23480 PID:147017 GB:U00096 PID:1621502; identified by sequence similarity; putative.
   
  
 0.648
VC_1091
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Similar to SP:P06202 GB:X05491 GB:X52093 PID:47802 PID:47808; identified by sequence similarity; putative.
       0.593
VC_1093
Oligopeptide ABC transporter, permease protein; Similar to GB:U00096 SP:P77664 PID:1742034 PID:1787498 PID:1805526; identified by sequence similarity; putative.
       0.589
VC_2044
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the glutaredoxin family. Monothiol subfamily.
  
   
 0.563
VC_2166
Trp repressor-binding protein; Similar to GB:M99166 SP:P30849 PID:148264 GB:U00096 PID:1651499; identified by sequence similarity; putative.
  
  
 0.400
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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