Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC_1101Conserved hypothetical protein; Identified by Glimmer2; putative. (321 aa)    
Predicted Functional Partners:
VC_1102
ABC transporter, permease protein, putative; Similar to GB:U14003 SP:P37772 PID:537073 GB:U00096 PID:1790678; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
  
 0.997
VC_1103
ABC transporter, ATP-binding protein; Similar to GB:L42023 SP:P44785 PID:1005459 PID:1220700 PID:1204872; identified by sequence similarity; putative.
 
    0.960
VC_1104
GGDEF family protein; Similar to PID:1001780 PID:1001789; identified by sequence similarity; putative.
       0.654
VC_1099
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.487
VC_1906
Hypothetical protein; Identified by Glimmer2; putative.
       0.487
VC_1907
Cys regulon transcriptional activator; Similar to GB:M15041 SP:P06613 GB:M34332 PID:145665 PID:145667; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
       0.479
VC_A1086
Response regulator; Similar to PID:1653310; identified by sequence similarity; putative.
  
    0.446
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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