STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1118Transcriptional regulator, putative; Similar to PID:1653608; identified by sequence similarity; putative. (142 aa)    
Predicted Functional Partners:
VC_1119
Oxidoreductase, short-chain dehydrogenase/reductase family; Similar to SP:P25970; identified by sequence similarity; putative.
 
   
 0.954
VC_1121
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.946
VC_1125
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.946
VC_1120
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.942
VC_1122
Cyclopropane-fatty-acyl-phospholipid synthase; Similar to GB:M98330 SP:P30010 PID:145514 GB:U00096 PID:1742735; identified by sequence similarity; putative.
 
   
 0.917
VC_1124
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.906
VC_1123
Hypothetical protein; Identified by Glimmer2; putative.
       0.785
glgC1
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
    
   0.673
glgC2
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
    
   0.673
VC_A0395
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the PhzF family.
  
 
 0.644
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.