STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1119Oxidoreductase, short-chain dehydrogenase/reductase family; Similar to SP:P25970; identified by sequence similarity; putative. (241 aa)    
Predicted Functional Partners:
VC_1125
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.966
VC_1118
Transcriptional regulator, putative; Similar to PID:1653608; identified by sequence similarity; putative.
 
   
 0.954
VC_1121
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.925
VC_1120
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.922
VC_1124
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.909
VC_1122
Cyclopropane-fatty-acyl-phospholipid synthase; Similar to GB:M98330 SP:P30010 PID:145514 GB:U00096 PID:1742735; identified by sequence similarity; putative.
 
   
 0.878
VC_0775
Vibriobactin synthesis protein, putative; Similar to GB:M60177 SP:P11454 GB:M17354 PID:145843 PID:551801; identified by sequence similarity; putative.
  
 
 0.812
VC_1123
Hypothetical protein; Identified by Glimmer2; putative.
       0.785
VC_2373
Glutamate synthase, large subunit; Similar to GB:X80485 PID:515938 SP:P55037 PID:1652093; identified by sequence similarity; putative.
    
  0.765
VC_2376
Glutamate synthase, large subunit; Similar to PID:606151 GB:U00096 PID:1789605; identified by sequence similarity; putative.
    
  0.765
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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