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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1148Conserved hypothetical protein; Identified by Glimmer2; putative. (284 aa)    
Predicted Functional Partners:
VC_0995
PTS system, N-acetylglucosamine-specific IIABC component; Similar to GP:2541900; identified by sequence similarity; putative.
 
 
 0.849
VC_2013
PTS system, glucose-specific IIBC component; Similar to GB:J02618 SP:P05053 PID:147393 GB:U00096 PID:1651541; identified by sequence similarity; putative.
 
 
 0.848
murP
PTS system, sucrose-specific IIBC component, putative; The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This system is involved in N-acetylmuramic acid (MurNAc) transport, yielding cytoplasmic MurNAc-6-P. Is also able to take up anhydro-N-acetylmuramic acid (anhMurNAc), but cannot phosphorylate the carbon 6, probably because of the 1,6-anhydro ring.
  
 
 0.825
VC_0910
PTS system, trehalose-specific IIBC component; Similar to SP:P36672 GB:U06195 PID:459401 GB:U00096 PID:2367362; identified by sequence similarity; putative.
  
 
 0.825
VC_A0653
PTS system, sucrose-specific IIBC component; Similar to GB:M76768 SP:P22825 PID:155262; identified by sequence similarity; putative.
  
 
 0.825
VC_A0530
Pyruvate-flavoredoxin oxidoreductase; Similar to GB:U00096 PID:1742250 PID:1742256 PID:1787642; identified by sequence similarity; putative.
    
  0.796
VC_0285
4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase; Similar to GB:L42023 PID:1004194 PID:1221953 PID:1204305 SP:P44480; identified by sequence similarity; putative.
 
  
 0.690
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
 
  
 0.605
VC_0269
Mannose-6-phosphate isomerase; Similar to SP:P25081 GB:X57117 PID:48820; identified by sequence similarity; putative; Belongs to the mannose-6-phosphate isomerase type 1 family.
  
 
 0.565
VC_1827
Mannose-6-phosphate isomerase; Similar to GB:M15380 SP:P00946 PID:146722 GB:U00096 PID:1742663; identified by sequence similarity; putative; Belongs to the mannose-6-phosphate isomerase type 1 family.
  
 
 0.565
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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