Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC_1152Hypothetical protein; Identified by Glimmer2; putative. (311 aa)    
Predicted Functional Partners:
VC_1151
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.825
fliD
Flagellar hook-associated protein FliD; Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end (By similarity).
 
    0.749
VC_1153
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.740
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.732
VC_1150
Hypothetical protein; Identified by Glimmer2; putative.
       0.729
VC_A1114
ParB family protein; Similar to SP:P08867 GB:M12987 GB:X04619 PID:148592 PID:42432; identified by sequence similarity; putative; Belongs to the ParB family.
  
     0.724
VC_1210
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.722
VC_1149
Glutamate decarboxylase, putative; Similar to SP:Q05683 PID:204226; identified by sequence similarity; putative.
 
     0.717
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.714
VC_1280
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.714
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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