Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
VC_1155Response regulator; Similar to GP:551953; identified by sequence similarity; putative. (181 aa)    
Predicted Functional Partners:
VC_1156
Sensor histidine kinase; Similar to GP:2655263; identified by sequence similarity; putative.
 
   
 0.963
VC_1157
Response regulator; Similar to PID:643672; identified by sequence similarity; putative.
 
   
0.826
VC_1158
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.725
VC_1315
Sensor histidine kinase; Similar to SP:P26489 GB:X56658 GB:X59071 PID:38703 PID:38705; identified by sequence similarity; putative.
 
   
 0.722
VC_1084
Sensory box sensor histidine kinase; Similar to PID:1773367; identified by sequence similarity; putative.
 
   
 0.710
VC_1154
Hypothetical protein; Identified by Glimmer2; putative.
       0.705
VC_0791
Sensor kinase citA; Similar to PID:924991 SP:P52687; identified by sequence similarity; putative.
  
 
 0.684
VC_1605
Sensor kinase citA, putative; Similar to PID:924991 SP:P52687; identified by sequence similarity; putative.
  
 
 0.684
VC_A0719
Sensor histide kinase; Similar to GB:L13078 SP:Q06067 PID:290419 GB:U00096 PID:1736874; identified by sequence similarity; putative.
 
   
 0.667
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
       0.658
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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