Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_1160Hypothetical protein; Identified by Glimmer2; putative. (329 aa)    
Predicted Functional Partners:
VC_1161
Gonadoliberin III-related protein; Similar to SP:P51923 PID:987488; identified by sequence similarity; putative.
 
    0.966
VC_1162
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.954
cmoB
Conserved hypothetical protein; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.
       0.730
cmoA
Conserved hypothetical protein; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).
       0.654
VC_A0514
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.649
VC_1165
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.603
rplW
Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
    
   0.575
VC_1487
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.458
VC_0113
Methyltransferase-related protein; Similar to SP:P37431 PID:295895; identified by sequence similarity; putative.
  
     0.438
VC_1184
NifS-related protein; Similar to GB:U00096 PID:1742766 PID:1742773 PID:1787970; identified by sequence similarity; putative.
 
 
 0.415
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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