STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1183Hypothetical protein; Identified by Glimmer2; putative. (219 aa)    
Predicted Functional Partners:
VC_1184
NifS-related protein; Similar to GB:U00096 PID:1742766 PID:1742773 PID:1787970; identified by sequence similarity; putative.
 
     0.854
volA
Lipase, putative; Required for the utilization of the prevalent host lipid lysophosphatidylcholine (LPC). Functions as a lipase that cleaves exogenous LPC and generates free fatty acids, which are then transported into the cell by fatty acid transporters such as FadL, and used in various metabolic pathways.
  
     0.538
hutZ
Conserved hypothetical protein; Involved in heme degradation. Catalyzes the degradation of heme to biliverdin, with the release of iron. Forms biliverdin beta and delta. Binds heme with high efficiency.
  
     0.505
VC_1997
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.478
VC_1538
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.423
VC_A1078
Transcriptional regulator, LuxR family; Similar to PID:887806 GB:U00096 SP:Q46791 PID:1789219; identified by sequence similarity; putative.
  
     0.422
VC_A0754
Lipase-related protein; Similar to SP:P19515 PID:488853; identified by sequence similarity; putative.
  
     0.421
VC_1185
GGDEF family protein; Similar to GP:2983209; identified by sequence similarity; putative.
       0.419
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.414
VC_1543
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.411
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.