STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1187Hypothetical protein; Identified by Glimmer2; putative. (122 aa)    
Predicted Functional Partners:
VC_1186
sanA protein; Similar to SP:P33017 PID:405877 PID:1161522 GB:U00096 PID:1788466; identified by sequence similarity; putative.
       0.849
maeA
Malate oxidoreductase; Similar to SP:P26616 GB:X55956 PID:581228 PID:669117 PID:669118; identified by sequence similarity; putative; Belongs to the malic enzymes family.
       0.849
VC_1189
Hypothetical protein; Identified by Glimmer2; putative.
       0.599
VC_2060
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.562
VC_2006
Chemotaxis protein CheV; Similar to GB:AE000511 PID:2313494; identified by sequence similarity; putative.
  
     0.553
VC_0502
Type IV pilin, putative; Similar to SP:P00117; identified by sequence similarity; putative.
  
     0.507
VC_A1021
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.472
VC_0455
Oxygen-independent coproporphyrinogen III oxidase, putative; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.452
VC_2064
Chemotaxis protein CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
  
     0.424
VC_A0689
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.413
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.