Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_1246Hypothetical protein; Identified by Glimmer2; putative. (191 aa)    
Predicted Functional Partners:
VC_1224
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.731
VC_1576
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0267 family.
  
     0.675
VC_2395
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.631
VC_1247
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.616
VC_1157
Response regulator; Similar to PID:643672; identified by sequence similarity; putative.
  
     0.552
VC_1280
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.551
VC_2298
Lipoprotein, putative; Similar to GB:L42023 SP:P43782 PID:1003225 PID:1222077 PID:644853; identified by sequence similarity; putative.
  
     0.551
trmL
rRNA methylase, SpoU family; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.
   
    0.545
VC_A0627
rRNA methylase, putative; Similar to GP:3328978; identified by sequence similarity; putative.
   
    0.545
VC_0815
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.539
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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