STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_1247Hypothetical protein; Identified by Glimmer2; putative. (131 aa)    
Predicted Functional Partners:
VC_1531
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.664
VC_1248
Methyl-accepting chemotaxis protein; Similar to PID:1255679; identified by sequence similarity; putative.
       0.625
VC_1246
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.616
VC_2747
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.600
VC_1621
Agglutination protein; Similar to GB:M64540 PID:150976; identified by sequence similarity; putative.
       0.487
VC_1622
Outer membrane protein, putative; Similar to GB:M18975 SP:P13794 GB:M94078 PID:151409 PID:151508; identified by sequence similarity; putative.
       0.487
VC_1249
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.486
rlmE
Cell division protein FtsJ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
   
    0.485
VC_1538
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.463
VC_1197
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.457
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.