Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_1249Conserved hypothetical protein; Identified by Glimmer2; putative. (170 aa)    
Predicted Functional Partners:
VC_1250
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.809
VC_1252
Competence damage protein CinA, putative; Similar to GB:U00096 PID:1788583 PID:1799602; identified by sequence similarity; putative; Belongs to the CinA family.
       0.635
VC_A0552
Fatty acid cis/trans isomerase; Similar to GP:2612821; identified by sequence similarity; putative.
  
     0.624
VC_0399
MSHA biogenesis protein MshI; Similar to PID:791156 PID:791153; identified by sequence similarity; putative.
  
     0.607
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.584
VC_2208
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.571
VC_1997
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.568
VC_1152
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.559
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.556
VC_1824
PTS system, nitrogen regulatory IIA component, putative; Similar to GB:U00096 PID:1788726 PID:1799794; identified by sequence similarity; putative.
  
     0.550
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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