STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1250Conserved hypothetical protein; Identified by Glimmer2; putative. (299 aa)    
Predicted Functional Partners:
VC_A0783
Arylesterase; Similar to GB:X71116 SP:Q07792 PID:296403; identified by sequence similarity; putative.
  
 
 0.848
VC_1249
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.809
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.795
VC_1251
Hypothetical protein; Identified by Glimmer2; putative.
       0.757
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.754
VC_1252
Competence damage protein CinA, putative; Similar to GB:U00096 PID:1788583 PID:1799602; identified by sequence similarity; putative; Belongs to the CinA family.
       0.749
VC_1280
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.748
VC_A1114
ParB family protein; Similar to SP:P08867 GB:M12987 GB:X04619 PID:148592 PID:42432; identified by sequence similarity; putative; Belongs to the ParB family.
 
     0.710
VC_1210
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.708
VC_1106
Preprotein translocase SecA subunit-related protein; Similar to SP:P06979 GB:X03239 PID:41605 GB:U00096 PID:1736570; identified by sequence similarity; putative; Belongs to the UPF0149 family.
  
     0.667
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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