STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1250Conserved hypothetical protein; Identified by Glimmer2; putative. (299 aa)    
Predicted Functional Partners:
VC_A0783
Arylesterase; Similar to GB:X71116 SP:Q07792 PID:296403; identified by sequence similarity; putative.
  
 0.938
VC_0414
Hypothetical protein; Identified by Glimmer2; putative.
   
 0.916
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.883
VC_1280
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.850
VC_A0027
Chitinase; Similar to SP:P32823 PID:216207; identified by sequence similarity; putative.
 
  
 0.807
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.796
VC_2195
Flagellar basal-body rod protein FlgG; Similar to GB:U00096 SP:P75939 PID:1787318; identified by sequence similarity; putative; Belongs to the flagella basal body rod proteins family.
    
   0.791
vcc
Collagenase; Possesses gelatinolytic activity; Belongs to the peptidase M9A family.
 
 
 0.776
VC_1252
Competence damage protein CinA, putative; Similar to GB:U00096 PID:1788583 PID:1799602; identified by sequence similarity; putative; Belongs to the CinA family.
    
  0.768
VC_A0700
Chitodextrinase; Similar to GP:3928775; identified by sequence similarity; putative.
    
 0.768
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.