STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1252Competence damage protein CinA, putative; Similar to GB:U00096 PID:1788583 PID:1799602; identified by sequence similarity; putative; Belongs to the CinA family. (415 aa)    
Predicted Functional Partners:
VC_0542
CinA-related protein; Similar to PID:1209307 SP:P51967; identified by sequence similarity; putative; Belongs to the CinA family.
   
 0.933
VC_1250
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.749
VC_1249
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.635
VC_1879
Rec2-related protein; Similar to GB:L42023 SP:P44408 PID:1003026 PID:1221968 PID:1204319; identified by sequence similarity; putative.
     
 0.567
VC_1251
Hypothetical protein; Identified by Glimmer2; putative.
       0.560
VC_1215
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Similar to GB:M12299 SP:P06978 PID:473749 GB:U00096 PID:1736571; identified by sequence similarity; putative; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
  
 0.495
VC_1667
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
  
 0.495
VC_1935
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase-related protein; Similar to GB:U00096 PID:1787676; identified by sequence similarity; putative.
  
  
 0.495
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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