STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1252Competence damage protein CinA, putative; Similar to GB:U00096 PID:1788583 PID:1799602; identified by sequence similarity; putative; Belongs to the CinA family. (415 aa)    
Predicted Functional Partners:
VC_0542
CinA-related protein; Similar to PID:1209307 SP:P51967; identified by sequence similarity; putative; Belongs to the CinA family.
  
 0.969
VC_A0208
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the NadD family.
 
  
 0.774
VC_1250
Conserved hypothetical protein; Identified by Glimmer2; putative.
    
  0.768
VC_2276
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0255 family.
 
  
  0.730
VC_2422
Nicotinate-nucleotide pyrophosphorylase, carboxylating; Similar to GB:L20833 SP:P30011 GB:L28105 PID:310262 PID:456041; identified by sequence similarity; putative; Belongs to the NadC/ModD family.
    
 0.693
pncB
Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.
  
 
 0.688
VC_2443
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
  0.661
nudC
MutT/nudix family protein; Similar to SP:P32664 PID:396335 GB:U00096 PID:1790429; identified by sequence similarity; putative.
    
 0.626
surE
Survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
    
  0.624
VC_1548
Hypothetical protein; Identified by Glimmer2; putative.
    
  0.623
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.