STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1264Iron-regulated protein A, putative; Similar to SP:P12608 PID:154525; identified by sequence similarity; putative. (435 aa)    
Predicted Functional Partners:
VC_1265
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.978
VC_1266
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.962
VC_1267
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.929
VC_0608
iron(III) ABC transporter, periplasmic iron-compound-binding protein; Similar to PID:1651916; identified by sequence similarity; putative.
  
    0.898
VC_0364
Bacterioferritin-associated ferredoxin; Similar to GB:M27176 SP:P13655 PID:145408 PID:606271 GB:U00096; identified by sequence similarity; putative.
  
    0.728
ribA
GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.
       0.722
VC_1268
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.609
VC_1269
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.575
VC_1270
Glyoxylase II family protein; Similar to GB:U00096 SP:P75849 PID:1787158; identified by sequence similarity; putative.
       0.547
VC_1262
Hypothetical protein; Identified by Glimmer2; putative.
       0.528
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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